Protocol Development
Resources to help you plan and structure your systematic review from start to finish.
PRISMA 2020 Guidelines
The PRISMA 2020 guidelines provide a comprehensive framework for reporting systematic reviews and meta-analyses, ensuring transparency and completeness.
Flow Diagram
The flow diagram depicts the flow of information through the different phases of a systematic review. It maps out the number of records identified, included and excluded, and the reasons for exclusions.
Research Question
Characteristics of a Good Research Question
Clear and Specific: A good question avoids ambiguous language and is specific enough to guide the search and review process.
Focused and Answerable: The question should be structured so that it can be answered based on existing studies.
Relevant to Field and Audience: It should address a knowledge gap or practical need in the field.
Framework-driven: Using frameworks like PICO for clinical research, SPICE for evaluating interventions, or SPIDER for qualitative research can help define the question's focus.
Framework Examples for Structuring Research Questions
PICO (Population, Intervention, Comparison, Outcome)
- Population: Who are you studying?
- Intervention: What is the main intervention being tested?
- Comparison: What are you comparing the intervention against?
- Outcome: What are the expected outcomes?
SPICE (Setting, Perspective, Intervention, Comparison, Evaluation)
- Setting: Where is the research taking place?
- Perspective: Who is affected or involved?
- Intervention: What is the intervention or factor being investigated?
- Comparison: What is the alternative to the intervention?
- Evaluation: What are the expected results or outcomes?
SPIDER (Sample, Phenomenon of Interest, Design, Evaluation, Research Type)
- Sample: Who is involved?
- Phenomenon of Interest: What is being studied?
- Design: What is the study design?
- Evaluation: How will outcomes be assessed?
- Research Type: Qualitative or quantitative?
Examples of Broad vs. Narrow Research Questions
Broad Questions
Useful for an initial exploratory phase but generally too vague for a systematic review:
- Broad Clinical Question: “What are the effects of physical activity on mental health?”
- Broad Education Question: “How do digital learning tools impact student performance?”
Narrow Questions
These are specific, structured, and answerable within a systematic review, ideal for using frameworks like PICO:
- Narrow Clinical Question (using PICO): “In adults with depression (Population), does aerobic exercise (Intervention) compared to no physical activity (Comparison) improve mental health outcomes, specifically mood and anxiety levels (Outcome)?”
- Narrow Education Question (using SPICE): “In urban high school settings (Setting), how do teachers' (Perspective) perceptions of digital learning platforms (Intervention) compare with traditional teaching methods (Comparison) in terms of student engagement and academic outcomes (Evaluation)?”
In summary, a strong research question provides clear boundaries for the review, making it easier to develop search strategies, define inclusion/exclusion criteria, and ensure findings are both relevant and manageable.
Team Composition
1. Primary Reviewer
Responsibilities: Leads the review, coordinates team activities, and takes primary responsibility for designing the protocol, developing the search strategy, and writing the final report.
Tasks: Oversees study selection, data extraction, and quality assessment. Ensures all steps align with the review protocol and communicates progress with stakeholders.
Importance: Acts as the central point of contact, making sure deadlines are met and that the review follows established guidelines like PRISMA.
2. Secondary Reviewer
Responsibilities: Works closely with the primary reviewer to validate decisions at each review stage, such as study screening and data extraction.
Tasks: Independently screens studies and extracts data, helping to identify inconsistencies and areas of potential bias. Collaborates on the final interpretation of findings and assists in writing.
Importance: Ensures that decisions made during the review are unbiased and reproducible by providing a second opinion and supporting a balanced analysis.
Additional Roles (If Available)
Information Specialist / Librarian
Responsibilities: Develops and refines the search strategy, ensuring its comprehensive and reproducible across databases.
Tasks: Conducts systematic searches, manages references, and assists with setting up citation management software.
Importance: Critical for capturing all relevant literature without overloading the review with irrelevant studies.
Data Analyst / Statistician
Responsibilities: Supports data analysis, especially if the review includes a meta-analysis.
Tasks: Analyzes data, manages data pooling, and applies statistical software for quantitative synthesis.
Importance: Ensures quantitative results are accurate, particularly for complex data synthesis.
Project Coordinator
Responsibilities: Oversees the administrative aspects, tracking progress, managing deadlines, and organizing meetings.
Tasks: Coordinates communication between team members, ensures documentation is updated, and manages timelines.
Importance: Keeps the team on track, especially helpful for larger or longer reviews involving multiple institutions.
Subject Matter Expert
Responsibilities: Provides in-depth knowledge on the topic, ensuring that the review accurately reflects current research and clinical or field-specific nuances.
Tasks: Advises on content-related decisions, helps define inclusion/exclusion criteria, and interprets findings.
Importance: Ensures the review's relevance and accuracy from a practical, field-specific perspective.
Inclusion and Exclusion Criteria
Possible Components for Defining Inclusion and Exclusion Criteria
Study Design
- Inclusion: Decide on the types of studies that are most appropriate for answering your research question, such as randomized controlled trials (RCTs), cohort studies, case-control studies, or qualitative studies.
- Exclusion: Exclude study designs that may not provide reliable evidence for your question, such as case reports or expert opinions (if focused on quantitative evidence).
- Example: “Include only RCTs and observational studies. Exclude case studies, reviews, and editorials.”
Population
- Inclusion: Define the target population by demographics (age, gender, ethnicity), health status, or other relevant characteristics.
- Exclusion: Exclude studies with populations that differ from your target (e.g., adults in a review focused on pediatric populations).
- Example: “Include studies on adults aged 18-65 with type 2 diabetes. Exclude studies involving patients with type 1 diabetes or participants under 18.”
Intervention / Exposure
- Inclusion: Specify the intervention or exposure of interest, such as a specific drug, therapy, or behavioral intervention.
- Exclusion: Exclude studies that involve different interventions or combinations that could confound results.
- Example: “Include studies evaluating aerobic exercise programs lasting at least 12 weeks. Exclude studies involving other forms of physical activity, like strength training or yoga.”
Comparator
- Inclusion: Define the acceptable comparison group, such as a placebo, standard treatment, or no treatment.
- Exclusion: Exclude studies that use unrelated or unstandardized comparators.
- Example: “Include studies that compare the intervention to standard care or a no-treatment control group. Exclude studies that use different physical activity types as comparators.”
Outcomes
- Inclusion: Specify the primary and secondary outcomes that the review aims to address (e.g., blood pressure reduction, quality of life scores).
- Exclusion: Exclude studies that do not report on relevant outcomes, as they may not contribute meaningfully to the review's goals.
- Example: “Include studies reporting on cardiovascular health outcomes, specifically blood pressure and cholesterol levels. Exclude studies without these outcome measures.”
Additional Considerations
- Language and Publication Date: Limit by language if necessary (e.g., include only English studies if translation resources are unavailable) or by publication date if there's a focus on recent evidence.
- Setting: Define relevant study settings, like clinical vs. community-based, if important for the context of your review.
Protocol Components
Protocol Registration
Register the protocol on a platform like PROSPERO or OSF, which allows others to view and verify the review's planned approach, ensuring transparency and minimizing the risk of research duplication.
Purpose and Rationale
Clearly define the review's objectives and justify why it is necessary. This section should describe the knowledge gap or clinical/practical problem the review aims to address.
Example: “This review aims to assess the effectiveness of aerobic exercise in reducing anxiety symptoms in adults, filling a gap in comparative effectiveness research.”
Research Question
Formulate a focused question using a framework like PICO (Population, Intervention, Comparator, Outcome). This structure helps maintain clarity and focus throughout the review.
Example: “In adults with anxiety (Population), does aerobic exercise (Intervention) compared to no exercise (Comparator) improve anxiety symptoms (Outcome)?”
Inclusion and Exclusion Criteria
Define criteria for study eligibility, detailing aspects like study design, population, interventions, comparisons, and outcomes. Set additional limits for language, publication date, and study setting if applicable.
Example: “Only randomized controlled trials on adults with clinically diagnosed anxiety reporting on symptom reduction will be included.”
Search Strategy
Outline the search strategy to be used for identifying studies, specifying databases (e.g., PubMed, Cochrane, Embase), search terms, Boolean operators, and any planned manual search methods.
Example: “A comprehensive search will be conducted in PubMed, Embase, and PsycINFO, using terms like ‘aerobic exercise’ AND ‘anxiety’ with Boolean operators and field tags.”
Screening and Selection Process
Describe the process for screening and selecting studies, including who will screen titles and abstracts, who will resolve disagreements, and the tools or software that will be used.
Example: “Two reviewers will independently screen titles and abstracts, with disagreements resolved by a third reviewer.”
Data Extraction
Provide a detailed plan for extracting relevant data, such as study characteristics, population demographics, intervention details, and outcome measures.
Example: “Data extraction will capture information on sample size, intervention frequency, duration, and primary outcome measures.”
Risk of Bias Assessment
Specify the tools or frameworks that will be used to assess the quality and risk of bias in included studies, like the Cochrane Risk of Bias tool for RCTs or ROBINS-I for non-randomized studies.
Example: “The Cochrane Risk of Bias (RoB 2) tool will be used to assess included RCTs, with two reviewers independently scoring each study.”
Data Synthesis and Analysis
Describe how data will be synthesized, either narratively or through a meta-analysis if pooling is possible. Include plans for subgroup analyses, sensitivity analyses, or any statistical tests.
Example: “Studies will be pooled using a random-effects model. Subgroup analysis will explore exercise duration as a potential moderator of effect size.”
Search Strategy
1. Define Key Concepts Using Frameworks
Identify the main elements of your research question. Frameworks like PICO (Population, Intervention, Comparator, Outcome) can help break down the question into manageable concepts.
Example: For the question, “In adults with anxiety, does aerobic exercise compared to no exercise improve symptoms?”
- Population: Adults with anxiety
- Intervention: Aerobic exercise
- Comparator: No exercise
- Outcome: Symptom improvement
2. Identify Keywords and Synonyms
For each key concept, identify potential keywords and synonyms. Consider variations in spelling, abbreviations, and related terms to avoid missing studies.
- Anxiety: anxiety disorders, generalized anxiety, GAD
- Aerobic exercise: aerobic training, cardiovascular exercise, endurance exercise
- No exercise: control, inactive, sedentary
- Symptoms: symptom improvement, symptom reduction, mental health outcomes
3. Use Boolean Operators
Combine keywords using Boolean operators:
- AND: Combines different concepts to narrow the search.
- OR: Includes synonyms or related terms, broadening the search.
- NOT: Excludes unwanted terms.
(anxiety OR “anxiety disorders” OR GAD) AND (“aerobic exercise” OR “cardiovascular exercise” OR “endurance training”) AND (improvement OR reduction)
4. Use Field Tags and Truncation
Many databases allow field tags (e.g., [tiab] in PubMed for title and abstract) to restrict searches to specific fields. Truncation (e.g., exercise* for exercise, exercises, exercising) helps include variations of a term.
(“aerobic exercise”[tiab] OR “cardiovascular exercise”[tiab]) AND “Anxiety”[Mesh]
5. Develop Separate Strategies for Each Database
Adapt the search strategy to each database's unique indexing system. For instance, PubMed uses MeSH terms (Medical Subject Headings), while Embase uses Emtree terms.
PubMed: (“Anxiety”[Mesh] OR “anxiety disorders”[tiab]) AND (“aerobic exercise”[tiab] OR “cardiovascular exercise”[tiab])
Embase: ('anxiety'/exp OR 'anxiety disorder') AND ('aerobic exercise'/exp OR 'cardiovascular exercise')
Additional Considerations
- Consider Grey Literature: Include unpublished studies from clinical trial registries, conference proceedings, and dissertations to minimize publication bias.
- Use Filters Judiciously: Apply filters (e.g., publication date, language) sparingly at the search stage to avoid excluding relevant studies.
- Document and Test: Document the complete search strategy for reproducibility and test it to ensure it captures key studies.
Example of a Complete PubMed Search Strategy
For the research question “Does aerobic exercise reduce symptoms in adults with anxiety?”:
(“Anxiety”[Mesh] OR “anxiety disorder*”[tiab] OR “generalized anxiet*”[tiab] OR GAD[tiab]) AND (“aerobic exercise*”[tiab] OR “cardiovascular exercise*”[tiab] OR “endurance training*”[tiab] OR exercise*[mesh]) AND (“symptom improvement”[tiab] OR “symptom reduction”[tiab] OR “mental health outcome*”[tiab])
Screening and Selecting
Phase 1: Initial Title/Abstract Screening Process
Begin with title and abstract screening to identify potentially relevant studies. This initial phase helps eliminate clearly irrelevant papers while flagging promising candidates for full-text review.
Phase 2: Full-Text Review
Conduct detailed assessment of full-text articles that passed initial screening. Apply inclusion/exclusion criteria rigorously and document reasons for exclusion.
Documentation
Maintain detailed records of the screening process, including decisions made and reasons for exclusion. This documentation is essential for creating the PRISMA flow diagram and ensuring transparency.
Bibliographic Data Management
Using a bibliographic manager like EndNote or Zotero is vital for organizing search results in systematic reviews. These tools allow importing and organizing references from multiple databases, collaboration through shared references, and citation formatting for manuscripts. EndNote is ideal for larger projects, while Zotero is free and open-source. Additionally, proper file sharing and backup are critical for collaboration, with cloud storage services (e.g., Dropbox, Google Drive) enabling real-time sharing and version control.
Risk of Bias Assessment
Randomized Controlled Trials (RCTs)
Use the Cochrane Risk of Bias (RoB 2) tool to assess:
- Random sequence generation
- Allocation concealment
- Blinding (participants, personnel, outcome assessment)
- Incomplete data
- Selective reporting
- Other biases
Judgments: Low, high, or unclear risk
Non-Randomized Studies (NRSI)
Use ROBINS-I to evaluate:
- Confounding
- Participant selection
- Intervention classification
- Deviations from intended interventions
- Missing data
- Outcome measurement
- Reported result selection
Judgments: Low, moderate, serious, or critical risk
Assessment Process
- Independent Assessment: Two reviewers independently assess each study
- Consensus: Disagreements resolved through discussion or third reviewer
- Documentation: Clear documentation of judgments and supporting evidence
- Reporting: Results presented in risk of bias tables and graphs
Evidence Table Building
Purpose and Benefits
- Organize study data systematically
- Facilitate comparison across studies
- Support quality assessment and synthesis
- Aid in identifying patterns and trends across studies
Key Components
A typical evidence table includes the following elements:
- Study descriptives (author, year, country)
- Study design and methods
- Participant characteristics
- Intervention and comparison details
- Outcome measures
- Results
- Notes or comments
Building the Table
When constructing evidence tables:
- Develop a standardized template based on your review question and included study designs
- Extract data consistently across studies, using predefined data extraction forms
- Include all relevant outcomes, even if not reported by all studies
- Present numerical data clearly, including sample sizes, effect sizes, and confidence intervals where available
- Summarize qualitative findings concisely but informatively
Software Tools
Several tools can assist in creating evidence tables:
- Our in house Evidence Table Builder
- Spreadsheet programs (e.g., Excel, Google Sheets)
- Specialized data extraction tools (e.g., EPPI-Reviewer)
Meta Analysis
Steps in Conducting a Meta-Analysis
- Define research question and inclusion criteria
- Conduct systematic literature search
- Screen and select studies
- Extract data from included studies
- Calculate effect sizes
- Assess heterogeneity
- Conduct statistical analysis
- Interpret and report results
Effect Size Calculation
A key step is calculating standardized effect sizes for each study. Common effect size measures include:
- Standardized mean difference (Cohen's d, Hedges' g) for continuous outcomes
- Odds ratios or risk ratios for dichotomous outcomes
- Correlation coefficients for associations
The choice depends on the type of outcome and data reported in studies. For example, Cohen's d is calculated as:
Where X̄₁ and X̄₂ are group means and s_pooled is the pooled standard deviation.
Assessing Heterogeneity
Heterogeneity refers to variability in the true effects across studies. It's assessed using:
- Cochran's Q test
- I² statistic - percentage of variability due to heterogeneity rather than chance
- Tau² - estimate of between-study variance
High heterogeneity may indicate the need for subgroup analyses or meta-regression.
Statistical Analysis
The main approaches are:
- Fixed-effect model - assumes a common true effect size
- Random-effects model - allows for variation in true effects between studies
A random-effects model is often preferred when heterogeneity is present.
Forest Plot Interpretation
Forest plots visually display the results, showing:
- Individual study effect sizes and confidence intervals
- Overall pooled effect size
- Heterogeneity statistics
The plot allows assessment of the consistency and precision of effects across studies.
Considerations
- Publication bias should be assessed (e.g., funnel plots, Egger's test)
- Sensitivity analyses can test the robustness of findings
- Results should be interpreted in context of study quality and limitations
By systematically combining and analyzing results across studies, meta-analysis provides a powerful tool for synthesizing evidence and estimating overall effects in a research area. Proper conduct and interpretation are crucial for drawing valid conclusions.
Data Analysis
Narrative Synthesis
Narrative synthesis is a qualitative approach that involves:
- Organizing studies into logical categories
- Exploring relationships within and between studies
- Assessing the robustness of the synthesis
This method is particularly useful when studies are too heterogeneous for meta-analysis.
Meta-Analysis
Meta-analysis is a statistical method for combining quantitative results from multiple studies. Key steps include:
- Calculating effect sizes for individual studies
- Pooling effect sizes using fixed-effect or random-effects models
- Assessing heterogeneity (e.g., using I² statistic)
- Conducting sensitivity analyses
Meta-analysis provides a precise estimate of the overall effect and increases statistical power.
Thematic Analysis
For qualitative studies, thematic analysis involves:
- Coding relevant data from primary studies
- Developing descriptive themes
- Generating analytical themes
This method allows for the integration of findings across qualitative studies.
Meta-Ethnography
Meta-ethnography is an interpretive method for synthesizing qualitative research. It involves:
- Determining how studies are related
- Translating studies into one another
- Synthesizing translations
This approach aims to produce new interpretations that go beyond the primary studies.
Content Analysis
Content analysis can be used to systematically categorize and quantify information from qualitative studies. It involves:
- Developing a coding framework
- Applying codes to study findings
- Analyzing the frequency and patterns of codes
Subgroup Analysis and Meta-Regression
These techniques explore how study characteristics influence outcomes:
- Subgroup analysis compares effects between predefined groups of studies
- Meta-regression examines the relationship between study-level covariates and effect sizes
Best Practices
- Choose analysis methods appropriate to your review question and included studies
- Prespecify analysis plans in your review protocol
- Assess the quality and strength of evidence (e.g., using GRADE approach)
- Consider both statistical significance and clinical importance
- Address heterogeneity and potential biases
- Conduct sensitivity analyses to test the robustness of findings
Reporting
When reporting your analysis:
- Clearly describe methods used
- Present results in both narrative and visual formats (e.g., forest plots for meta-analyses)
- Discuss limitations and potential biases
- Interpret findings in the context of existing knowledge and practice
By carefully analyzing and synthesizing data from included studies, systematic reviews can provide valuable insights and inform evidence-based decision-making in various fields.
Write the Paper
Title and Authors
Title should:
- Be concise yet descriptive
- Clearly indicate it's a systematic review
- Include key concepts or population studied
Authors section should:
- List all contributors
- Include affiliations
- Specify roles (e.g., using CRediT taxonomy)
Abstract and Keywords
Structured abstract (250-300 words) should include:
- Background/Objectives
- Methods (data sources, study eligibility, participants, interventions)
- Results (main findings, effect sizes)
- Conclusions
- PROSPERO registration number
Keywords:
- 5-7 terms not used in the title
- Facilitate indexing and searching
Introduction
- Background and rationale
- Objectives
- Research question (often using PICO format)
Methods
Protocol and Registration:
- Reference to published protocol
- PROSPERO registration details
Information Sources and Search Strategy:
- Databases searched and search dates
- Full electronic search strategy for at least one database
- Any additional sources (e.g., grey literature)
- Any limits applied
Study Selection and Data Collection:
- Screening process and number of reviewers
- Data extraction method
- Process for obtaining missing data
Results
- Study Selection (PRISMA flow diagram)
- Study Characteristics
- Risk of Bias Within Studies
- Results of Individual Studies
- Synthesis of Results
- Additional Analysis
Discussion
- Summary of Evidence
- Limitations (study, outcome, and review-level)
- Conclusions and implications for future research
Supporting Sections
- References (following journal-specific formatting)
- Appendix (supplementary materials, detailed search strategies, data extraction forms)
- Additional tables or figures not included in main text
Team Composition Diagram
This diagram illustrates the key roles and responsibilities in a systematic review team structure.
Research Question Framework
This diagram shows the key components and frameworks for developing effective research questions in systematic reviews.
Inclusion and Exclusion Criteria Framework
This diagram outlines the key components and considerations for developing inclusion and exclusion criteria in systematic reviews.
Protocol Components Framework
This diagram outlines the essential components and structure of a systematic review protocol.
Search Strategy Framework
This diagram illustrates the key steps and considerations in developing a comprehensive search strategy for systematic reviews.
Screening and Selection Process
This diagram illustrates the systematic approach to screening and selecting studies for inclusion in your review.
Risk of Bias Assessment Framework
This diagram illustrates the key components and process for assessing risk of bias in systematic reviews.
Evidence Table Framework
This diagram illustrates the key components and structure for building effective evidence tables in systematic reviews.
Meta Analysis Framework
This diagram illustrates the key steps and considerations in conducting a meta-analysis for systematic reviews.
Writing the Paper Framework
This diagram outlines the key components and structure for writing a systematic review paper.
Data Analysis Framework
This diagram illustrates the key approaches and methods for analyzing data in systematic reviews.